Transformers Prime: Unknown

Lissa tried her best to sleep, but she felt like she didn't know how in this state of mind.
It was too unfamiliar, and didn't feel natural. She decided to just listen to whatever dialogue was spoken.
"Leila, do you remember anything before you were captured?" Optimus questioned.
There was a long moment of silence passed before she spoke.
"I remember attempting to storm the mine and find answers, that's all." She spoke quickly. It was obvious she did not want to speak about what happened.
"Why did you disobey orders? You where told to scout the area, and call for backup if a Decepticon was found." Optimus question, with a bit of demand.
"I did call for backup." Leila retorted
"But only after you engaged the enemy" Ratchet snapped. Lissa heard footsteps and assumed he walked into the conversation.
"If I had called backup first they would have been gone. There was no time to waste. I had to take action!" Leila argued, crossing her arms.
"However that action was the cause of this ordeal." Optimus stated, causing Leila to pause in her words. "If you had followed orders and called for backup, this would have never happened." Ratchet chimed in.
Leila sighed, speechless and defeated.
"I will not deal out punishment, for I feel this is punishment enough, however, for the time being, you are suspended to base until we can understand what happened." Optimus said, Leila was about to protest, however decided otherwise.
Lissa realized the conversation had shifted away from Leila.
"Ratchet, run standard biological test to figure out how they did this." Optimus ordered as big metallic steps grew softer.

'you're still awake, aren't you?'

Leila's voice startled Lissa out of her train of thought, causing her to panic a bit.

'I'm sorry, I don't know how ...I mean I know how but ....not really...' Lissa felt like crawling into a corner, feeling like a complete idiot, she stopped talking.

Leila didn't answer right away, but seemed to assess the situation.

'Then I'm going to try to sleep, I'll figure it out for the both of us' She said In a surprisingly calm voice.

'y-ya, ' Lissa replied.

Lissa's body seemed to slouch a bit as her eyes changed, from a bright blue, to a normal hazel color. She sat quietly on the oversized table, while Ratchet gathered medical tools.

Ratchet walked over to Lissa, who seemed to cower a bit, intimidated by his height. Ratchet noticed this and bent over a bit.

"I'm going to scan you, it shouldn't hurt." He said in a reassuring tone.

Lissa nodded while he scanned. As he scanned, a wierd, unexplainable feeling followed. After he was done, Lissa just looked around, now that she had control of her head.

Lissa looked around, examining certain details,only to space out for a couple second, then snap out of it.

"This is interesting" Ratchet mumbled to himself.

Lissa shifted towards the screen, although she couldn't make out any of the symbols, she could understand a picture that seemed to be of her.

The diagram showed a picture, a mix of a X-ray and a green tinted picture. Her left arm was robotic, metal bars where her bones would have been, with occasionally a few sheets of metal to fill in the gaps. Her right arm was normal, besides a few scratches and scarred cuts.

Her right leg was just like her left arm, however it went up her abdomen more than she would like. The same materials, with a couple of new additions.
Lissa felt most uncomfortable with the metal on her abdomen, almost fusing with her skin. Her left leg was half of the other, but stopping at the knee, again fusing with her organic flesh.

Lissa looked away from the image and messed around with her left hand. Deep in thought, she wondered what her family was doing. Where they looking for her? Was Dana alright?

Lissa silently cursed herself for leaving her, for thinking that her problems where the only ones that mattered. Thinking that running away would fix everything, where would she have gone if she didn't get stuck in this? Would they have found her? A part of her wanted her family to find her, but not now.

Lissa wanted to talk to herself in her head, but didn't want to wake Leila, seeing how she seems like she could turn and bite your head off.

Ratchet turned Lissa, who quickly snapped out of her thoughts and looked at him.

"You may want to sleep, your body needs it." He said turning back to his computer.

Lissa nodded and searched for a place to get down of the tall platform.

I'm a horrible person. I am so sorry, honestly things got really busy, bad and I was so caught up.....well I found a way, that's all that matters, I'll have to update on my phone from now on...so I'm apologizing in advance.

I know how I want this story to end, It takes place in the third season (I'll name episodes next time) but I need some ideas, any ideas would help. If not it's fine. (　^ω^)